Jörg Hagmann

Building pangenome graphs

This paper introduces PGGB, a pipeline for building pangenome graphs that includes all variation without bias, enabling variation detection, conservation measurement, recombination event detection, and phylogenetic inference.

Pangenome graph layout by Path-Guided Stochastic Gradient Descent

This paper introduces a graph layout algorithm for pangenome graphs, enabling efficient visualization of large-scale genomic data.

RPW8/HR Repeats Control NLR Activation in A. thaliana

The paper shows that the number of RPW8/HR repeats influences hybrid necrosis severity when combined with specific RPP7 variants in Arabidopsis thaliana.

The rate and potential relevance of new mutations in a colonizing plant lineage

The paper estimates the mutation rate and evolutionary relevance in a colonizing plant lineage using historical and modern genomic data.

A Role For The F-Box Protein HAWAIIAN SKIRT In Plant miRNA Function

The paper identifies HAWAIIAN SKIRT as an F-box dependent regulator of miRNA biogenesis in Arabidopsis thaliana.