Author

Soumen Ghosh

QIMR Berghofer Medical Research InstituteORCID 0000-0002-6931-840XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Organism:human· 1 Approach:large language model· 1 Research Focus:spatial domain detection· 1 Assay:spatial transcriptomics· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Andrew P. BarbouriD· 1 shared Caroline Louise CooperiD· 1 shared Clemence J. BelleiD· 1 shared Lauren G. AoudeiD· 1 shared Nicola WaddelliD· 1 shared Rajat VashisthaiD· 1 shared Sandra BrosdaiD· 1 shared Viktor VeghiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 28 mutual co-author links

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1 shared paperBioinformatics

Andrew P. BarbourORCID

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1 paper

Recent·Most cited

BioinformaticsbioRxivPreprintOct 16, 2025

Agent SPI-WSI: In context learning for computationally spatial pathwayinferring on whole slide histopathology images conditioned on bulk RNAsequencing using pathologist in the loop.

Rajat Vashistha, Sandra Brosda, Clemence J. Belle…·Viktor Vegh

The paper introduces an AI agent that localizes bulk RNA-seq pathway activity in histopathology images using pathologist feedback and large language models.

DOI 10.1101/2025.10.16.682972

humanwhole-genome sequencing

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