Julian R. Dupuis

Fully integrative species delimitation with machine learning and diverse data types in delimSOM 2.0

delimSOM 2.0 integrates diverse data types using machine learning to improve species delimitation, showing strong performance with larger samples and robustness to missing data.

NicheDiv: A DAPC framework to quantify niche divergence across highly multivariate environmental space

NicheDiv quantifies niche divergence using DAPC across environmental variables, showing improved performance over existing methods in high-dimensional data.

Whole-genome evaluation of genetic rescue: the case of a curiously isolated and endangered butterfly

The paper evaluates genetic rescue for an endangered butterfly, finding low genetic diversity and potential outbreeding depression, suggesting caution before implementing rescue efforts.

Would an RRS by any other name sound as RAD?

The paper reviews 36 restriction enzyme-based sequencing methods, identifies naming inconsistencies, and advocates for more standardized naming conventions.

HiMAP: robust Phylogenomics from Highly Multiplexed Amplicon sequencing

HiMAP enables robust phylogenomic analysis using highly multiplexed amplicon sequencing, revealing high support for the generic status of Zeugodacus and the sister relationship between Dacus and Zeugodacus.