Author

Jonah C. Daneshmand

University of LouisvilleORCID 0000-0002-7101-7542Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Eric Christian RouchkaiD· 2 shared Julia H. CharikeriD· 2 shared Akshitkumar M. MistryiD· 1 shared Alice Shum-Siu· 1 shared Carlos de AlmeidaiD· 1 shared Cynthia GomesiD· 1 shared David S.K. MagnusoniD· 1 shared Greta M. Cesarz· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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2 shared papersBioinformatics

Eric Christian RouchkaORCID

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2 papers

Recent·Most cited

Impact of integration on persistent homology clustering and biological signal detection in scRNA-seq data

Jonah C. Daneshmand, Julia H. Chariker, Akshitkumar M. Mistry, Eric Christian Rouchka

This paper evaluates how data integration affects persistent homology clustering and biological signal detection in scRNA-seq data, showing topological methods can help distinguish biological patterns from batch noise.

bioRxiv · Jul 24, 2025 · PreprintBioinformatics

Construction of a searchable database for gene expression changes in spinal cord injury experiments

Eric Christian Rouchka, Carlos de Almeida, Randi B. House, Jonah C. Daneshmand, Julia H. Chariker, Sujata Saraswat-Ohri, Cynthia Gomes, Morgan J. Forston, Alice Shum-Siu, Greta M. Cesarz, Jeffrey C. Petruska, David S.K. Magnuson

The paper constructs a searchable database of RNA-Seq data from spinal cord injury experiments to enable cross-study and cross-species analysis.

Journal of Neurotrauma · Nov 2, 2023Peer-reviewedBioinformatics