Julia H. Chariker

The paper measures within-host diversity of Mycobacterium tuberculosis in a Ghanaian cohort and finds modest diversity, lineage patterns, and no transmission signal.

This paper evaluates how data integration affects persistent homology clustering and biological signal detection in scRNA-seq data, showing topological methods can help distinguish biological patterns from batch noise.

The paper analyzes gene expression and alternative splicing in MS using RNA-seq data to identify differentially expressed genes, spliced transcripts, and SNVs associated with disease pathways and potential therapeutic targets.

The paper analyzes SNVs in G4-forming regions across databases to identify their impact on G4 structure and disease associations.

The paper constructs a searchable database of RNA-Seq data from spinal cord injury experiments to enable cross-study and cross-species analysis.

The paper classifies G-quadruplex sequences into families using computational methods and annotates them based on sequence, structure, and functional properties.

This paper identifies G-quadruplex forming sequences in three manatee papillomaviruses using computational and biophysical analysis, suggesting their regulatory role in viral function.

The paper identifies successful mentoring communities by analyzing mentor-mentee relationships among Nobel laureates using network analysis.