Author

Thomas Vogel

University of TübingenORCID 0000-0002-7127-352XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:deconvolution· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Kay NieseltiD· 2 shared Eric J. SimoniD· 1 shared Hanati Tuoken· 1 shared Laura Achauer· 1 shared Maik Wolfram-SchauerteiD· 1 shared Mathias Witte PaziD· 1 shared Sara Maria Fälth Savitski· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 16 mutual co-author links

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2 shared papersBioinformatics

Kay NieseltORCID

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2 papers

Recent·Most cited

Gradient boosting regression and convolution improve deconvolution of bulk transcriptomes

Maik Wolfram-Schauerte, Thomas Vogel, Laura Achauer, Sara Maria Fälth Savitski, Hanati Tuoken, Eric J. Simon, Kay Nieselt

GrooD improves bulk transcriptome deconvolution using gradient boosting and convolution, showing better performance and interpretability on human blood samples from sepsis patients.

bioRxiv · Mar 5, 2026 · PreprintBioinformatics

TSS-Captur: A User-Friendly Characterization Pipeline for Transcribed but Unclassified RNA transcripts

Mathias Witte Paz, Thomas Vogel, Kay Nieselt

TSS-Captur characterizes unclassified TSSs by classifying transcripts, predicting termination sites, and analyzing promoter motifs to improve prokaryotic transcriptome understanding.

NAR Genomics and Bioinformatics · Sep 28, 2024Peer-reviewedBioinformatics