Author

Nicholas S. Edmunds

University of ReadingORCID 0000-0002-7238-6008Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:benchmarking· 2 Assay:protein structure· 2 Research Focus:protein structure prediction· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Approach:deep learning· 1

Frequent Co-Authors

Ahmet G GenciD· 2 shared Liam James McGuffiniD· 2 shared Recep AdiyamaniD· 1 shared Shuaa M. A. Alharbi· 1 shared

Activity by Year

2022-2023 · peak 1/yr

Co-Author Collaboration Network

4 top collaborators · 6 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Ahmet G GencORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Benchmarking of AlphaFold2 accuracy self-estimates as empirical quality measures and model ranking indicators and their comparison with independent model quality assessment programs.

Nicholas S. Edmunds, Ahmet G Genc, Liam James McGuffin

This paper benchmarks AlphaFold2's self-estimates (plDDT, pTM) against independent quality assessment programs and evaluates their reliability for tertiary and quaternary structure models.

bioRxiv · Dec 15, 2023 · PreprintBioinformatics

Improvement of protein tertiary and quaternary structure predictions using the ReFOLD4 refinement method and the AlphaFold2 recycling process

Recep Adiyaman, Nicholas S. Edmunds, Ahmet G Genc, Shuaa M. A. Alharbi, Liam James McGuffin

The paper improves protein structure predictions by combining ReFOLD4 and AlphaFold2 recycling, enhancing model accuracy and conformational landscape representation.

bioRxiv · Dec 6, 2022 · PreprintBioinformatics