Predicting Spatial Transcriptomics from H&E Image by Pretrained Contrastive Alignment Learning
Jiawei Zou, Kai Xiao, Zexi Chen, Jiazheng Pei, Jing Lin Xu, Tao Chen, Likun Hou, Chunyan Wu, Yunlang She, Zhiyuan Yuan, Luonan Chen
This paper introduces CarHE, a method that predicts spatial transcriptomics data from H&E images using contrastive learning, achieving high accuracy and enabling cost-effective analysis.
bioRxiv · Jun 15, 2025 · PreprintBioinformatics