Author

Stephen Malina

Columbia UniversityORCID 0000-0002-7383-0094Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

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Daniel M. Cizin· 1 shared David A. KnowlesiD· 1 shared

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2022-2022 · peak 1/yr

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1 shared paperGenomics

Daniel M. Cizin

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1 paper

Recent·Most cited

GenomicsPLoS Computational BiologyPeer-reviewedOct 20, 2022

Deep Mendelian Randomization: Investigating the causal knowledge of genomic deep learning models

Stephen Malina, Daniel M. Cizin, David A. Knowles

This paper introduces DeepMR, a method to estimate causal relationships between genomic marks using deep learning models, and applies it to validate and discover new TF relationships in reprogramming.

15 citations

DNA methylationChIP-seq

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