Author

Jackson Tonnies

University of WashingtonORCID 0000-0002-7564-9037Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:Arabidopsis· 2 Research Focus:gene regulatory network inference· 2 Organism:mouse· 2 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

Christine QueitschiD· 2 shared Josh T. CuperusiD· 2 shared Nicholas A. MuethiD· 2 shared Stanley FieldsiD· 2 shared Tobias JoresiD· 2 shared Ajith AnandiD· 1 shared Bing YangiD· 1 shared Bo LiuiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersPlant Biology

Christine QueitschORCID

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2 papers

Recent·Most cited

Massively parallel characterization and deep learning of enhancers in plant genomes

Tobias Jores, Nicholas A. Mueth, Sayeh Gorjifard, Sebastian ST Triesch, Dominic Schirmer, Jackson Tonnies, Kerry L. Bubb, Josh T. Cuperus, Stanley Fields, Christine Queitsch

The paper characterizes plant enhancer activity across multiple species and develops a deep learning model to predict enhancer strength and identify functional motifs.

bioRxiv · Apr 29, 2026 · PreprintPlant Biology

Small DNA elements that act as both insulators and silencers in plants

Tobias Jores, Nicholas A. Mueth, Jackson Tonnies, Si Nian Char, Bo Liu, Valentina Grillo-Alvarado, Shane E. Abbitt, Ajith Anand, Stéphane Deschamps, Scott H. Diehn, William J. Gordon-Kamm, Shuping Jiao, Kathy R. Munkvold, Heather Snowgren, Nagesh Sardesai, , Christine Queitsch

The paper identifies small DNA elements in plants that function as both insulators and silencers depending on regulatory context, validated in multiple plant species.

The Plant Cell · Apr 11, 2025Peer-reviewedPlant Biology