Yann Ponty

The paper designs RNA switches using Restricted Boltzmann machines and validates their structural switching properties through experimental testing.

CParty computes a hierarchically constrained partition function for pseudoknotted RNA structures in cubic time, enabling stochastic analysis of pseudoknotted RNA ensembles and revealing kinetic features of SARS-CoV-2 targets.

This paper introduces an FPT algorithm to reduce treewidth in graphs for RNA bioinformatics problems, showing promising results on RNA design and alignment tasks.

RNAxplorer improves RNA structure sampling by using guiding potentials to explore underrepresented regions, producing more diverse and representative samples.

IPANEMAP models RNA structure from multiple probing reactivity profiles, demonstrating improved performance through integration of diverse experimental data.

The paper introduces BayesPairing 2, a sequence search algorithm for RNA 3D module identification, showing improved speed and accuracy over its predecessor.

This paper demonstrates that the number of designable RNA secondary structures decreases exponentially with size, due to undesignable motifs.