Author

Mateo Gray

University of AlbertaORCID 0000-0001-7143-1367Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Approach:matrix factorization· 1

Frequent Co-Authors

Hosna JabbariiD· 2 shared Sebastian WilliD· 2 shared Luke TrinityiD· 1 shared Ulrike StegeiD· 1 shared Yann PontyiD· 1 shared

Activity by Year

2023-2023 · peak 2/yr

Co-Author Collaboration Network

5 top collaborators · 10 mutual co-author links

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2 shared papersBioinformatics

Hosna JabbariORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintJun 5, 2023

SparseRNAFolD: Sparse RNA pseudoknot-free Folding including Dangles

Mateo Gray, Sebastian Will, Hosna Jabbari

SparseRNAFolD improves RNA secondary structure prediction by reducing time and space complexity while including dangles contributions, outperforming LinearFold in memory use and speed for sequences up to 1000 bases.

DOI 10.1101/2023.06.05.543808

statistical modelmatrix factorization

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 16, 2023

CParty: Hierarchically Constrained Partition Functionof RNA Pseudoknots

Luke Trinity, Mateo Gray, Sebastian Will…·Hosna Jabbari

CParty computes a hierarchically constrained partition function for pseudoknotted RNA structures in cubic time, enabling stochastic analysis of pseudoknotted RNA ensembles and revealing kinetic features of SARS-CoV-2 targets.

1 citation

statistical model

𝕏 PostBluesky