Author

Louis Ranjard

Australian National UniversityORCID 0000-0002-7622-4823Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Research Focus:genome assembly· 2 Approach:statistical model· 2 Approach:Bayesian inference· 1 Research Focus:phylogenetics / evolution· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1

Frequent Co-Authors

Allen G. RodrigoiD· 3 shared Thomas K. F. WongiD· 3 shared Jeet SukumaraniD· 1 shared Steven WuiD· 1 shared Teng LiiD· 1 shared Yu LiniD· 1 shared

Activity by Year

2018-2021 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 12 mutual co-author links

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3 shared papersBioinformatics

Allen G. RodrigoORCID

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3 papers

Recent·Most cited

An assembly-free method of phylogeny reconstruction using short-read sequences from pooled samples without barcodes

Thomas K. F. Wong, Teng Li, Louis Ranjard, Steven Wu, Jeet Sukumaran, Allen G. Rodrigo

AFPhyloMix reconstructs haplotype phylogenies from pooled short-read sequences without barcoding, achieving 80% accuracy for up to 15 haplotypes in simulations and real data.

PLoS Computational Biology · Sep 13, 2021Peer-reviewedBioinformatics

Effective Machine-Learning Assembly For Next-Generation Sequencing With Very Low Coverage

Louis Ranjard, Thomas K. F. Wong, Allen G. Rodrigo

This paper introduces a dynamic programming algorithm for improving DNA sequence assembly with very low coverage by updating the reference sequence dynamically, achieving better alignment and assembly quality.

BMC Bioinformatics · Dec 1, 2019Peer-reviewedBioinformatics

HaploJuice : Accurate haplotype assembly from a pool of sequences with known relative concentrations

Thomas K. F. Wong, Louis Ranjard, Yu Lin, Allen G. Rodrigo

HaploJuice improves haplotype assembly accuracy by estimating sub-sample proportions and using dynamic programming, outperforming existing methods on simulated and real data.

BMC Bioinformatics · Oct 22, 2018Peer-reviewedBioinformatics