Author

Hongyang Chen

Zhejiang LabORCID 0000-0002-7626-0162Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:deep learning· 2 Research Focus:clustering· 1 Assay:Hi-C· 1 Research Focus:imputation· 1 Approach:variational autoencoder· 1

Frequent Co-Authors

Ao ChangiD· 1 shared Heqin ZhuiD· 1 shared Mingqian LiiD· 1 shared Mu ZhouiD· 1 shared Peng XiongiD· 1 shared Qiao LiuiD· 1 shared Rui JiangiD· 1 shared Ruifeng LiiD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

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10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Ao ChangORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 16, 2025

Toward Accurate RNA Non-Canonical Structure Prediction: The NC-Bench Benchmark and the NCfold Framework

Heqin Zhu, Ruifeng Li, Ao Chang…·S. Kevin Zhou

The paper introduces NC-Bench, a benchmark for RNA non-canonical base pair prediction, and NCfold, a framework that achieves state-of-the-art results on this benchmark.

DOI 10.1101/2025.11.16.688746

deep learningbenchmarking

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BioinformaticsBriefings in BioinformaticsPeer-reviewedOct 25, 2022

Deep generative modeling and clustering of single cell Hi-C data

Qiao Liu, Wanwen Zeng, Wei Zhang…·Shaoting Zhang

This paper introduces scDEC-Hi-C, a deep generative framework for analyzing single cell Hi-C data, showing improved clustering and imputation over existing methods.

21 citations

Hi-Cdeep learning

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