Ruifeng Li

The paper introduces NC-Bench, a benchmark for RNA non-canonical base pair prediction, and NCfold, a framework that achieves state-of-the-art results on this benchmark.

This paper introduces structRFM, a structure-guided RNA foundation model that improves RNA function prediction and structural inference through pre-training on sequence-structure pairs.

PhenoScreen predicts compound-induced phenotypic changes by linking chemical space to cellular morphology using contrastive learning, showing effectiveness in osteosarcoma and rhabdomyosarcoma.