Author

Phaedra Kokkini

Natural History MuseumORCID 0000-0002-7652-0956Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Ecology· 1 Evolutionary Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:multiple species· 3 Research Focus:ecology & biodiversity· 2 Approach:experimental assay· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Approach:statistical model· 1

Frequent Co-Authors

Andrew C. KitcheneriD· 3 shared John L. RichardsiD· 3 shared Katerina GuschanskiiD· 3 shared Konstantina SaliariiD· 3 shared Markella MoraitouiD· 3 shared Olivier S. G. PauwelsiD· 3 shared Richard SabiniD· 3 shared Roberto Portela MigueziD· 3 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersEcology

Andrew C. KitchenerORCID

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Author profile →

3 papers

Recent·Most cited

Dental calculus formation is linked to diet and phylogeny in mammals

John L. Richards, Markella Moraitou, Ella Nates, Konstantina Saliari, Emmanuel Gilissen, Zena Timmons, Andrew C. Kitchener, Olivier S. G. Pauwels, Richard Sabin, Phaedra Kokkini, Roberto Portela Miguez, Katerina Guschanski

This study examines dental calculus presence across 142 mammalian species to identify diet and phylogeny factors influencing its formation.

Ecology and Evolution · Jul 1, 2026Peer-reviewedEcology

Museum specimens reveal evolutionary drivers and functions of oral microbiome in mammals

Markella Moraitou, Piotr Rozwalak, Johnny Richards, Konstantina Saliari, Emmanuel Gillissen, Zena Timmons, Andrew C. Kitchener, Olivier S. G. Pauwels, Richard Sabin, Phaedra Kokkini, Roberto Portela Miguez, Daniela C. Kalthoff, Fabian L. Kellner, Jaelle C. Brealey, Bas E. Dutilh, , Katerina Guschanski

The paper analyzes oral microbiomes from museum specimens to show that diet drives oral microbiome evolution and some microbes have ancient origins.

bioRxiv · Jun 20, 2026 · PreprintEvolutionary Biology

Host traits impact the outcome of metagenomic library preparation from dental calculus samples across diverse mammals

Markella Moraitou, Johnny Richards, Chanah Bolyos, Konstantina Saliari, Emmanuel Gilissen, Zena Timmons, Andrew C. Kitchener, Olivier S. G. Pauwels, Richard Sabin, Phaedra Kokkini, Roberto Portela Miguez, Katerina Guschanski

This study evaluates the impact of host traits on metagenomic library preparation from dental calculus across 32 mammals, identifying diet-related challenges and success factors.

Molecular Ecology Resources · Sep 1, 2025Peer-reviewedGenomics