Author

Made Ananda Krisna

University of IndonesiaORCID 0000-0002-7681-7135Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Research Focus:database / resource· 2 Organism:human· 2 Research Focus:clustering· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Keith A. JolleyiD· 3 shared Martin C. J. MaideniD· 3 shared Kasia Maria ParfittiD· 2 shared Odile Barbara HarrisoniD· 2 shared Alexandra BoubouriD· 1 shared Anastasia UnittiD· 1 shared Angela B. BrueggemanniD· 1 shared Charlotte PeetersiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersGenomics

Keith A. JolleyORCID

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3 papers

Recent·Most cited

MicrobiologybioRxivPreprintNov 11, 2026

Development of a core genome Multilocus Sequence Typing (cgMLST) and Life Identification Number (LIN) code schema for the Burkholderia cepacia complex

Kasia Maria Parfitt, Keith A Jolley, Charlotte Peeters…·Martin C.J. Maiden

The paper develops a core genome MLST (cgMLST) and 14-digit LIN code system for the Burkholderia cepacia complex, implemented in PubMLST for improved typing and outbreak investigation.

DOI 10.64898/2026.11.10.765358

whole-genome sequencingstatistical model

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GenomicsbioRxivPreprintMar 28, 2025

Neisseria gonorrhoeae LIN codes: a Robust, Multi-Resolution Lineage Nomenclature

Anastasia Unitt, Made Ananda Krisna, Kasia Maria Parfitt…·Odile Barbara Harrison

The paper develops a multi-resolution lineage nomenclature for Neisseria gonorrhoeae using LIN codes to improve lineage identification and reflect population structure and antibiotic resistance associations.

6 citations

humanwhole-genome sequencing

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GenomicsbioRxivPreprintApr 15, 2024

Development and Implementation of a Core Genome Multilocus Sequence Typing (cgMLST) scheme for Haemophilus influenzae

Made Ananda Krisna, Keith A. Jolley, William Monteith…·Martin C. J. Maiden

This paper develops and validates a core genome MLST (cgMLST) scheme for Haemophilus influenzae using pangenome analysis and validates it with genomic datasets, showing high congruence with phylogenetic analysis.

1 citation

humanwhole-genome sequencing

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