Author

Sarthok Rasique Rahman

Pennsylvania State UniversityORCID 0000-0002-7889-9138Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 2 Approach:experimental assay· 2 Assay:whole-genome sequencing· 2 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Assay:GWAS summary statistics· 1 Research Focus:protein structure prediction· 1

Frequent Co-Authors

Heather M. HinesiD· 2 shared Jeffrey D. LozieriD· 1 shared Jonathan Cnaani· 1 shared Kaustubh AdhikariiD· 1 shared Lisa N. KinchiD· 1 shared Nick V. GrishiniD· 1 shared Sajal DashiD· 1 shared Soumya Subhra PariaiD· 1 shared

Activity by Year

2021-2023 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 10 mutual co-author links

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2 shared papersBioinformatics

Heather M. HinesORCID

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4 papers

Recent·Most cited

Constitutive and variable patterns of genome-wide DNA methylation in populations from spatial-environmental range extremes of the bumble bee Bombus vosnesenskii

Sarthok Rasique Rahman, Jeffrey D. Lozier

The paper maps DNA methylation patterns in two bumble bee populations from environmental extremes, finding hypomethylation in a northern population and potential regulatory roles for methylation.

bioRxiv · May 2, 2023 · PreprintGenomics

fastman: A Fast Algorithm for Visualising GWAS Results Using Manhattan and Q-Q Plots in R

Soumya Subhra Paria, Sarthok Rasique Rahman, Kaustubh Adhikari

fastman is an R package that efficiently visualizes GWAS results with Manhattan and Q-Q plots, supporting non-model organisms and various genetic statistics.

bioRxiv · Apr 19, 2022 · PreprintBioinformatics

Incremental BLAST: incremental addition of new sequence databases through e-value correction

Sajal Dash, Sarthok Rasique Rahman, Heather M. Hines, Wu-chun Feng

Incremental BLAST updates BLAST search results efficiently by recalculating e-values for new database additions without rerunning full searches, reducing computational cost.

PLoS ONE · Apr 22, 2021Peer-reviewedBioinformatics

A combined RAD-Seq and WGS approach reveals the genomic basis of yellow colour variation in bumble bee Bombus terrestris

Sarthok Rasique Rahman, Jonathan Cnaani, Lisa N. Kinch, Nick V. Grishin, Heather M. Hines

The paper identifies a SNP in the cut gene responsible for yellow coloration in bumble bees, showing it affects protein structure without major external phenotypes.

Scientific Reports · Apr 12, 2021Peer-reviewedGenomics