Author

Jie Yao

University of GeorgiaORCID 0000-0002-7898-1799Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Alexandre P. MarandiD· 1 shared Chuyu YeiD· 1 shared Ethan M. PickeringiD· 1 shared Hongyu CheniD· 1 shared Jiaqi LiiD· 1 shared Longjiang FaniD· 1 shared Nianmin ShangiD· 1 shared Qian‐Hao ZhuiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenetics

Alexandre P. MarandORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

GeneticsbioRxivPreprintJul 22, 2026

Sequence-based modeling of plant epigenomes reveals cell-type-specific cis-regulatory grammar

Jie Yao, Jiaqi Li, Xuan Zhang…·Robert J. Schmitz

The paper introduces PEAgent, a deep-learning framework predicting single-cell chromatin accessibility from DNA sequence in plants, revealing cell-type-specific cis-regulatory patterns and their conservation.

1 citation

plant (other)DNA methylation

BioinformaticsbioRxivPreprintDec 14, 2024

Sub-clustering, marker identification and multi-omics integration influenced by protoplasting in plant scRNA -seq data analysis

Jie Yao, Nianmin Shang, Hongyu Chen…·Qinjie Chu

This study identifies and mitigates protoplasting biases in plant scRNA-seq data, improving clustering, marker gene identification, and multi-omics integration.

1 citation

plant (other)scRNA-seq