Author

Jonathan S. Weerakkody

Yale UniversityORCID 0000-0002-7949-3965Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:large language model· 1

Frequent Co-Authors

David PittiD· 1 shared Finja Bokstaller· 1 shared Karima Ait Ouares· 1 shared Uma Sthanu· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

4 top collaborators · 3 mutual co-author links

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1 shared paperNeuroscience

David PittORCID

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2 papers

Recent·Most cited

NeurosciencebioRxivPreprintSep 14, 2026

Paired RNA profiling of circulating small extracellular vesicles links survival in ALS to reactive glial - vascular programs

Jonathan S. Weerakkody, Finja Bokstaller, Uma Sthanu, David Pitt

The paper pairs miRNA and mRNA profiles from circulating sEVs to identify survival-associated programs in ALS, finding a five-miRNA panel and a five-gene core linked to glial and vascular responses.

DOI 10.64898/2026.09.08.749915

humanbulk RNA-seq

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BioinformaticsbioRxivPreprintSep 9, 2026

✦ In-depth digest

EVd3x: A Bioinformatics Platform for Evidence-aware Interpretation of EV Cargo

Karima Ait Ouares, Jonathan S. Weerakkody

EVd3x integrates over 22 million records from 28 public resources so one fixed molecule set can be traced from reported EV cargo through disease, pathway, cell and interaction evidence.

1 citation

humanproteomics

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