James D. Brunner

Minimizing the number of optimizations for efficient community dynamic flux balance analysis.

This paper introduces a method to reduce computational cost in dynamic flux balance analysis by minimizing optimizations, achieving an 85% speed-up for microbial communities.

A dynamical system model for predicting gene expression from the epigenome

This paper introduces a stochastic dynamical systems model to predict gene expression from methylation data using a gene regulatory network, and provides software for implementation.