Author

Robert Mullan Cook-Deegan

Washington CenterORCID 0000-0002-8251-4237Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Approach:statistical model· 3 Assay:whole-genome sequencing· 3 Research Focus:variant calling· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Organism:Drosophila· 1 Approach:experimental assay· 1

Frequent Co-Authors

Adam FrankishiD· 3 shared Adam L. Felsenfeld· 3 shared Adam M. NovakiD· 3 shared Alexandra P. LewisiD· 3 shared Alexey KolesnikoviD· 3 shared Alice B. PopejoyiD· 3 shared Allison RegieriD· 3 shared Anastasiya BelyaevaiD· 3 shared

Activity by Year

2023-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersGenomics

Adam FrankishORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Pangenome Graph Construction from Genome Alignment with Minigraph-Cactus

Glenn Hickey, Jean Monlong, Jana Ebler, Adam M. Novak, Jordan M. Eizenga, Yan Ping Gao, Haley Abel, Lucinda Fulton, Mobin Asri, Gunjan Baid, Carl A. Baker, Anastasiya Belyaeva, Konstantinos Billis, Guillaume Bourque, Silvia Buonaiuto, , Valérie Schneider

The paper introduces Minigraph-Cactus, a pangenome pipeline that constructs pangenome graphs directly from whole-genome alignments, demonstrating improved performance in mapping and variant calling across human and Drosophila data.

Nature Biotechnology · May 10, 2023Peer-reviewedBioinformatics

A Draft Human Pangenome Reference

Wen‐Wei Liao, Mobin Asri, Jana Ebler, Daniel Doerr, Marina Haukness, Glenn Hickey, Shuangjia Lu, Julian Lucas, Jean Monlong, Haley Abel, Silvia Buonaiuto, Xian H. Chang, Haoyu Cheng, Justin Chu, Vincenza Colonna, , Francesca Floriana Tricomi

The paper presents a draft human pangenome reference that improves variant discovery and structural variant detection compared to existing references.

Nature · May 10, 2023Peer-reviewedGenomics

Recombination between heterologous human acrocentric chromosomes

Andrea Guarracino, Silvia Buonaiuto, Leonardo Gomes de Lima, Tamara Potapova, Arang Rhie, Sergey Koren, BORIS Y. RUBINSTEIN, Christian Fischer, Haley Abel, Lucinda L. Antonacci-Fulton, Mobin Asri, Gunjan Baid, Carl A. Baker, Anastasiya Belyaeva, Konstantinos Billis, , Ashley D. Sanders

The paper shows recombination between heterologous human acrocentric chromosomes using pangenome data, revealing pseudo-homologous regions linked to Robertsonian translocations.

Nature · May 10, 2023Peer-reviewedGenomics