Author

Ivan Antonov

Russian Academy of SciencesORCID 0000-0002-8330-6907Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Approach:statistical model· 2 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

Yulia A. MedvedevaiD· 2 shared Aditi KanhereiD· 1 shared Aki MinodaiD· 1 shared Akira HasegawaiD· 1 shared Albin SandeliniD· 1 shared Alessandro BonettiiD· 1 shared Alexander V. FavoroviD· 1 shared Alexandre Fort· 1 shared

Activity by Year

2018-2020 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersGenomics

Yulia A. MedvedevaORCID

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2 papers

Recent·Most cited

Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping

Jordan A. Ramilowski, Chi Wai Yip, Saumya Agrawal, Jen-Chien Chang, Yari Ciani, Ivan V. Kulakovskiy, Mickaël Mendez, Jasmine Li Ching Ooi, John F. Ouyang, Nick Parkinson, Andreas Petri, Leonie Roos, Jessica Severin, Kayoko Yasuzawa, Imad Abugessaisa, , Chinatsu Yamamoto

The paper functionally annotates human long non-coding RNAs by systematically knocking down 285 lncRNAs and analyzing molecular phenotypes using CAGE sequencing.

Genome Research · Jul 1, 2020Peer-reviewedGenomics

Transcriptome-Wide Prediction Of lncRNA-RNA Interactions By A Thermodynamics Algorithm

Ivan Antonov, Марахонов Андрей Владимирович, Maria A. Zamkova, Skoblov Mikhail, Yulia A. Medvedeva

The paper introduces ASSA, a computational pipeline that predicts RNA-RNA interactions by combining sequence alignment and thermodynamics, outperforming existing tools.

Journal of Bioinformatics and Computational Biology · Jan 29, 2018Peer-reviewedBioinformatics