Author

Travis A. Lee

Salk Institute for Biological StudiesORCID 0000-0002-8352-8956Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Organism:Arabidopsis· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:development & morphogenesis· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Joseph R. EckeriD· 2 shared Adam SeluzickiiD· 1 shared Bruce Jow· 1 shared Carolyn O’ConnoriD· 1 shared Joanne ChoryiD· 1 shared Joseph R. NeryiD· 1 shared Kamonkan Gamnerdsiri· 1 shared Michelle LiemiD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersPlant Biology

Joseph R. EckerORCID

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2 papers

Recent·Most cited

Transient cell states encode positional information to direct asymmetric growth

Travis A. Lee, Kamonkan Gamnerdsiri, Natanella Illouz‐Eliaz, Tatsuya Nobori, Joseph R. Nery, Bruce Jow, Michelle Liem, Carolyn O’Connor, Joseph R. Ecker

The paper shows transient cell states in plants encode positional information to direct asymmetric growth through gene regulatory networks and hormonal signaling.

bioRxiv · May 22, 2026 · PreprintPlant Biology

Precision-Based Filtering Facilitates Integration of Conventional and Single-Nucleus Transcriptomes to Identify Time- and Temperature-Sensitive Cell Populations

Adam Seluzicki, Travis A. Lee, Nolan T. Hartwick, Todd P. Michael, Joseph R. Ecker, Joanne Chory

The paper introduces a coefficient of variation-based filter for RNAseq data to retain low-variation genes, enabling better identification of cell populations in Arabidopsis snRNAseq data.

bioRxiv · Jan 31, 2026 · PreprintBioinformatics