Author
Lawrence Berkeley National LaboratoryORCID 0000-0002-8440-738XUnclaimed ORCID profile · follow to get notified of new preprints
4 papers
Recent·Most cited
Prachi Gupta, William J. Riehl, Mikaela Cashman…·Paramvir Dehal
The KBase Research Agent automates genome analysis workflows, producing reproducible results and annotated genomes without human intervention.
David Kainer, Matthew J. Lane, Kyle A. Sullivan…·Daniel Jacobson
RWRtoolkit enables multi-omic network analysis using random walks on multiplex networks across any species, providing tools for topological analysis and statistical evaluation.
Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang…·Christopher S. Henry
The paper introduces the ModelSEED biochemistry database, which integrates metabolic annotations and supports the reconstruction and analysis of metabolic models for plants, fungi, and microbes.
Adam P. Arkin, Robert W. Cottingham, Christopher S. Henry…·Dantong Yu
Open-source KBase platform unites reference genomes and biochemistry, over 70 apps, Jupyter-based Narratives with provenance, and a Docker SDK for reproducible plant and microbial systems biology.