Simple computational methods can outperform deep learning in designing diverse, binder-enriched antibody libraries
Lewis Chinery, Alissa M. Hummer, Brij Bhushan Mehta, Rahmad Akbar, Puneet Rawat, Andrei Slabodkin, Khang Lê Quý, Fridtjof Lund‐Johansen, Victor Greiff, Jeliazko R. Jeliazkov, Charlotte Mary Deane
The paper shows that simple computational methods like BLOSUM can create diverse, binder-enriched antibody libraries better than deep learning approaches.
bioRxiv · Mar 26, 2024 · PreprintBioinformatics