Author

Shu Yang

University of PennsylvaniaORCID 0000-0002-8507-7191Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Shu Yang7 papers · University of Pennsylvania

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1 Assay:imaging· 1 Approach:large language model· 1 Organism:mouse· 1 Approach:optimal transport· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Li SheniD· 2 shared Anyu PaniD· 1 shared Azim Shad· 1 shared Chentianye XuiD· 1 shared Helen Luo· 1 shared Hongzhuo Chen· 1 shared Huasheng YuiD· 1 shared Hyowon Shin· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Li ShenORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintOct 13, 2026

Towards Robust Automated Mouse Scratching Behavior Detection for Itch Research

Shu Yang, Anyu Pan, Hyowon Shin…·Li Shen

This paper develops Scratch-AID+, an automated mouse scratching detection framework, showing that fine-tuned video foundation models outperform classic models in generalizability and accuracy.

DOI 10.64898/2026.10.12.758682

BioinformaticsGigaSciencePeer-reviewedJan 1, 2026

GROTIA: An Interpretable Graph-Regularized Optimal TransportFramework for Diagonal Single-Cell IntegrativeAnalysis

Zexuan Wang, Qipeng Zhan, Shu Yang…·Li Shen

GROTIA aligns multi-omics single-cell datasets using optimal transport and graph regularization, identifying key biological markers and enabling novel subpopulation discovery.

1 citation

scRNA-seqoptimal transport