Author

Oliver Stolpe

Humboldt-Universität zu BerlinORCID 0000-0002-8686-2941Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Research Focus:software / tool· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:variant calling· 1 Research Focus:variant effect prediction· 1 Assay:whole-exome sequencing· 1

Frequent Co-Authors

Dieter BeuleiD· 3 shared Manuel HoltgreweiD· 3 shared Mikko NiemineniD· 3 shared January Mikolaj WeineriD· 2 shared Alexej KnausiD· 1 shared Benedikt ObermayeriD· 1 shared Björn Fischer‐ZirnsakiD· 1 shared Dominik SeelowiD· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersBioinformatics

Dieter BeuleORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Kiosc: an integrated platform for managing bioinformatics data analysis containers

Federico Marotta, Oliver Stolpe, Benedikt Obermayer, January Mikolaj Weiner, Manuel Holtgrewe, Dieter Beule, Mikko Nieminen

Kiosc simplifies managing containerized web apps for bioinformatics analysis, enabling interactive result visualization and sharing across projects and institutions.

bioRxiv · Aug 24, 2026 · PreprintBioinformatics

SODAR: managing multi-omics study data and metadata

Mikko Nieminen, Oliver Stolpe, Mathias Kuhring, January Mikolaj Weiner, J. Patrick Pett, Dieter Beule, Manuel Holtgrewe

SODAR is a software package that manages multi-omics study data and metadata using a web interface and APIs, supporting the ISA-Tab format and iRODS storage.

GigaScience · Dec 28, 2022Peer-reviewedBioinformatics

VarFish - Collaborative and Comprehensive Variant Analysis for Diagnosis and Research

Manuel Holtgrewe, Oliver Stolpe, Mikko Nieminen, Stefan Mundlos, Alexej Knaus, Uwe Kornak, Dominik Seelow, Lara Segebrecht, Malte Spielmann, Björn Fischer‐Zirnsak, Felix Boschann, Ute I. Scholl, Nadja Ehmke, Dieter Beule

VarFish is a web application for variant analysis in rare disease genetics, offering quality control, filtering, annotation, and collaboration tools for diagnostic and research use.

bioRxiv · Jan 27, 2020 · PreprintBioinformatics