Nita Parekh

NetREx provides a server for analyzing co-expression networks in rice under abiotic stress conditions to identify novel genes and tissue-specific interactions.

HyINDEL improves INDEL detection by integrating clustering, split-mapping, and assembly-based methods, showing better recall and F-score on simulated and real data.

The paper analyzes mutations in Indian SARS-CoV-2 isolates to understand their geographic distribution and transmission patterns during early 2020.

PRIGSA2 improves repeat detection in proteins by integrating structural validation and filtering, identifying 3,408 novel uncharacterized structural repeats in the Protein Data Bank.

The paper introduces a network-based machine learning approach for domain identification in proteins, achieving comparable performance to existing methods and improving with prior domain count information.

The paper uses a network-based meta-analysis of seven drought-tolerant rice genotypes to identify drought-responsive gene modules and pathways involved in stress response.