Author

Yunfeng Wang

Centre National de la Recherche ScientifiqueORCID 0000-0002-8737-3103Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Yunfeng Wang1 paper · Nankai University

Biology Disciplines

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Bioinformatics· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Organism:human· 2 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Research Focus:dimensionality reduction· 1 Assay:Ribo-seq· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Daniel GautheretiD· 3 shared Haoliang XueiD· 3 shared Antoine LainéiD· 2 shared Mélina GallopiniD· 2 shared Camille MarchetiD· 1 shared Chloé BessièreiD· 1 shared Christine PourceliD· 1 shared Ha N Nguyen· 1 shared

Activity by Year

2021-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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3 shared papersBioinformatics

Daniel GautheretORCID

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3 papers

Recent·Most cited

KaMRaT: a C++ toolkit for k-mer count matrix dimension reduction

Haoliang Xue, Mélina Gallopin, Camille Marchet, Ha N Nguyen, Yunfeng Wang, Antoine Lainé, Chloé Bessière, Daniel Gautheret

KaMRaT reduces the dimensionality of k-mer count matrices from high-throughput sequencing data to identify condition-specific sequences.

Bioinformatics · Mar 1, 2024Peer-reviewedBioinformatics

The contribution of uncharted RNA sequences to tumor identity in lung adenocarcinoma

Yunfeng Wang, Haoliang Xue, Marine Aglave, Antoine Lainé, Mélina Gallopin, Daniel Gautheret

The paper uses a k-mer based method to analyze RNA-seq data at the nucleotide level in lung adenocarcinoma, identifying novel tumor-specific RNA features and their clinical relevance.

NAR Cancer · Jan 13, 2022Peer-reviewedBioinformatics

2-kupl: mapping-free variant detection from DNA-seq data of matched samples

Yunfeng Wang, Haoliang Xue, Christine Pourcel, Yang Du, Daniel Gautheret

2-kupl detects variants between DNA-seq samples without mapping, achieving higher precision than existing methods and identifying novel variants in hard-to-map regions.

BMC Bioinformatics · Jun 5, 2021Peer-reviewedBioinformatics