Author

Christine Pourcel

Centre National de la Recherche ScientifiqueORCID 0000-0002-8951-466XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Research Focus:variant calling· 1 Assay:whole-exome sequencing· 1

Frequent Co-Authors

Daniel GautheretiD· 2 shared Gilles VergnaudiD· 1 shared Haoliang XueiD· 1 shared Jean‐Philippe VernadetiD· 1 shared Kimberley Houenoussi· 1 shared Roudaina Boukheloua· 1 shared Yang DuiD· 1 shared Yunfeng WangiD· 1 shared

Activity by Year

2020-2021 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 16 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersBioinformatics

Daniel GautheretORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

2-kupl: mapping-free variant detection from DNA-seq data of matched samples

Yunfeng Wang, Haoliang Xue, Christine Pourcel, Yang Du, Daniel Gautheret

2-kupl detects variants between DNA-seq samples without mapping, achieving higher precision than existing methods and identifying novel variants in hard-to-map regions.

BMC Bioinformatics · Jun 5, 2021Peer-reviewedBioinformatics

TOP the Transcription Orientation Pipeline and its use to investigate the transcription of non-coding regions: assessment with CRISPR direct repeats and intergenic sequences.

Kimberley Houenoussi, Roudaina Boukheloua, Jean‐Philippe Vernadet, Daniel Gautheret, Gilles Vergnaud, Christine Pourcel

The paper introduces TOP, a pipeline to determine transcription orientation of sequences using RNA-Seq data, validated on CRISPR repeats and small RNAs in Staphylococcus aureus.

bioRxiv · Jan 15, 2020 · PreprintBioinformatics