Author

Yining Liu

Columbia UniversityORCID 0000-0002-8779-2906Unclaimed ORCID profile · follow to get notified of new preprints

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Yining Liu4 papers · Case Western Reserve University

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:optimal transport· 2 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Assay:imaging· 1 Approach:machine learning (classical)· 1 Organism:plant (other)· 1 Assay:scRNA-seq· 1

Frequent Co-Authors

Andrew J. BlumbergiD· 2 shared Elham AziziiD· 2 shared Lingting ShiiD· 1 shared Valerio GalantiiD· 1 shared Yinuo JiniD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

5 top collaborators · 8 mutual co-author links

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2 shared papersBioinformatics

Andrew J. BlumbergORCID

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2 papers

Recent·Most cited

Automated Cell Type Annotation with Reference Cluster Mapping

Valerio Galanti, Lingting Shi, Elham Azizi, Yining Liu, Andrew J. Blumberg

This paper introduces RefCM, a method that improves cell type annotation in scRNA-seq data using optimal transport and integer programming, achieving accurate cross-technology, cross-tissue, and cross-species mappings.

bioRxiv · Nov 30, 2024 · PreprintBioinformatics

CellStitch: 3D Cellular Anisotropic Image Segmentation via Optimal Transport

Yining Liu, Yinuo Jin, Elham Azizi, Andrew J. Blumberg

CellStitch improves 3D cell segmentation in anisotropic images using optimal transport, outperforming existing methods on anisotropic datasets.

BMC Bioinformatics · Dec 15, 2023Peer-reviewedBioinformatics