Md. Khaledur Rahman

FastFeatGen: Faster parallel feature extraction from genome sequences and efficient prediction of DNA N6-methyladenine sites

FastFeatGen improves DNA N6-methyladenine site prediction by combining parallel feature extraction and machine learning, achieving high accuracy on rice and mouse genomes.

PhISCS - A Combinatorial Approach for Sub-perfect Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data

PhISCS integrates single-cell and bulk sequencing data to reconstruct sub-perfect tumor phylogenies by minimizing false negatives, false positives, and ISA violations.

Prefix Block-Interchanges on Binary and Ternary Strings

The paper presents upper bounds and algorithms for sorting binary and ternary strings using prefix block-interchange operations and provides a classification for ternary strings based on required operations.

The 2-approximation algorithm of sorting by prefix transposition revisited

The paper revisits a 2-approximation algorithm for sorting by prefix transpositions, improving its running time to O(n log n) using a permutation tree data structure.