Author

Mohsen Rezaei

University of MissouriORCID 0000-0002-8805-477XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:protein sequence· 2 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Dong He XuiD· 2 shared Farzaneh EsmailiiD· 2 shared Mahdi PourmirzaeiiD· 2 shared Mohammadreza PourmirzaeiiD· 2 shared Duolin WangiD· 1 shared Kai CheniD· 1 shared Salhuldin AlqarghuliiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

7 top collaborators · 19 mutual co-author links

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2 shared papersBioinformatics

Dong He XuORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMar 12, 2025

Predicting Kinase-Specific Phosphorylation Sites with Pretrained Protein Language Models

Mahdi Pourmirzaei, Farzaneh Esmaili, Kai Chen…·Dong He Xu

The paper introduces two sequence-based models to predict kinase-specific phosphorylation sites, showing improved performance and zero-shot capability.

DOI 10.1101/2025.03.12.642740

protein sequencedeep learning

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMar 11, 2025

Using Autoregressive-Transformer Model for Protein-Ligand Binding Site Prediction

Mahdi Pourmirzaei, Salhuldin Alqarghuli, Farzaneh Esmaili…·Dong He Xu

This paper introduces a unified model combining a protein language model with an autoregressive transformer to predict protein-ligand binding sites, achieving broad ligand coverage and improved performance for underrepresented ligands.

1 citation

protein sequencetransformer / foundation model

𝕏 PostBluesky