Author

Sjors A. Koppes

Erasmus MCORCID 0000-0002-8833-531XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Assay:imaging· 2 Research Focus:spatial domain detection· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Approach:microscopy & imaging analysis· 1

Frequent Co-Authors

Hamed AbbasiiD· 2 shared Loes EttemaiD· 2 shared Michail DoukasiD· 2 shared Miriam MenzeliD· 2 shared Stijn KeereweeriD· 2 shared Andy Liu· 1 shared Congyu LiaoiD· 1 shared Franca auf der HeideniD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersCancer Biology

Hamed AbbasiORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Cancer BiologyBiomedical Optics ExpressPeer-reviewedApr 14, 2026

Whole-Slide Mapping of Tumor Tissue Fiber Architecture via Computational Scattered Light Imaging

Hamed Abbasi, Loes Ettema, Rens van Elk…·Miriam Menzel

This paper introduces ComSLI, a computational method to map collagen fiber orientation in paraffin-treated tumor tissues, enabling analysis of tumor growth and desmoplastic reactions.

2 citationstop 2%

humanbulk RNA-seq

𝕏 PostBluesky

PathologyNature CommunicationsPeer-reviewedNov 5, 2025

Micron-resolution fiber mapping in histology independent of sample preparation

Marios Georgiadis, Franca auf der Heiden, Hamed Abbasi…·Miriam Menzel

This paper introduces ComSLI, a method to map fiber networks in histology without sample preparation, showing its application across tissues and diseases.

9 citations

humanmouse

𝕏 PostBluesky