Author

Daniel G. C. Treen

Lawrence Berkeley National LaboratoryORCID 0000-0002-8896-0000Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Assay:metabolomics· 2 Approach:statistical model· 2

Frequent Co-Authors

Benjamin P. BoweniD· 2 shared Trent R. NortheniD· 2 shared Mingxun WangiD· 1 shared Thomas V. HarwoodiD· 1 shared Wibe Albert de JongiD· 1 shared

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2021-2023 · peak 1/yr

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5 top collaborators · 10 mutual co-author links

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2 shared papersBioinformatics

Benjamin P. BowenORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintFeb 14, 2023

BLINK: Ultrafast tandem mass spectrometry cosine similarity scoring

Thomas V. Harwood, Daniel G. C. Treen, Mingxun Wang…·Benjamin P. Bowen

BLINK rapidly computes cosine similarity scores for tandem mass spectra, achieving high accuracy and speed through sparse matrix operations.

DOI 10.1101/2023.02.14.528550

metabolomicsstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintFeb 24, 2021

SIMILE enables alignment of fragmentation mass spectra with statistical significance

Daniel G. C. Treen, Trent R. Northen, Benjamin P. Bowen

SIMILE aligns fragmentation mass spectra with statistical significance, identifying more structurally similar compound pairs than cosine-based methods.

1 citation

metabolomicsstatistical model

𝕏 PostBluesky