Simon J. Furney

Whole genome sequencing of pre-treatment and post-treatment locally advanced rectal cancer using long and short read technologies

The paper compares short-read and long-read WGS in rectal cancer to assess concordance of somatic alterations and detect epigenomic changes.

A multi-step filtering pipeline for human read removal enhances detection of Fusobacterium in WGS datasets with immunohistochemical confirmation in mucinous rectal cancer.

The paper introduces a multi-step filtering pipeline to remove human reads from WGS data, improving detection of Fusobacterium in rectal cancer samples confirmed by immunohistochemistry.