Author

Zhen Fan

University of FloridaORCID 0000-0002-8965-7898Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:plant (other)· 4 Approach:statistical model· 4 Assay:whole-genome sequencing· 2 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Assay:metabolomics· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Vance M. WhitakeriD· 3 shared Seonghee LeeiD· 2 shared Aaron ListoniD· 1 shared Anne PlottoiD· 1 shared Christopher R. BarbeyiD· 1 shared Ed W. StoveriD· 1 shared Elizabeth A. BaldwiniD· 1 shared Frederick G. GmitteriD· 1 shared

Activity by Year

2022-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersGenomics

Vance M. WhitakerORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Homoploid Hybridization Resolves the Origin of Octoploid Strawberries

Zhen Fan, Aaron Liston, Pamela S. Soltis, Tia‐Lynn Ashman, Kim E. Hummer, Vance M. Whitaker

This study resolves the origin of octoploid strawberries by identifying hybridization events between specific diploid species as the source of subgenomes A and B.

bioRxiv · Sep 12, 2024 · PreprintGenetics

Genomic signatures of strawberry domestication and breeding

Zhen Fan, Vance M. Whitaker

This study analyzes genomic signatures in cultivated strawberry to trace its domestication and breeding history, revealing changes in ancestry proportions and selection pressures over time.

bioRxiv · Jul 12, 2023 · PreprintGenomics

A large sensory and multi-omics evaluation unraveled chemical and genetic basis of orange flavor

Zhen Fan, Kristen A. Jeffries, Xiuxiu Sun, Gabriela María Olmedo, Wei Ming Zhao, Matthew R. Mattia, Ed W. Stover, John A. Manthey, Elizabeth A. Baldwin, Seonghee Lee, Frederick G. Gmitter, Anne Plotto, Jinhe Bai

The paper evaluates flavor compounds and genetic factors in orange hybrids to identify key esters and genes involved in orange flavor, improving breeding options.

bioRxiv · Jul 10, 2023 · PreprintGenetics

Telomere-to-Telomere and Haplotype-Phased Genome Assemblies of the Heterozygous Octoploid 'Florida Brilliance' Strawberry (Fragaria x ananassa)

Hyeondae Han, Christopher R. Barbey, Zhen Fan, Sujeet Verma, Vance M. Whitaker, Seonghee Lee

The paper presents a telomere-to-telomere, haplotype-phased genome assembly of the strawberry cultivar Florida Brilliance using long-read and Hi-C data, confirming high collinearity and completeness.

bioRxiv · Oct 5, 2022 · PreprintGenomics