Jérémie Zumer

Pepid: a Highly Modifiable, Bioinformatics-Oriented Peptide Search Engine

Pepid is a flexible peptide search engine designed for bioinformatics research, enabling modifications and integration of deep learning methods while maintaining competitive performance.

Mining Mass Spectra for Peptide Facts

The paper improves peptide identification by combining database-driven and de novo approaches through a deep learning-based length prediction model.