Author

Nicholas Lubbers

Los Alamos National LaboratoryORCID 0000-0002-9001-9973Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Genetics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Christina R. SteadmaniD· 2 shared Karissa Y. SanbonmatsuiD· 2 shared Anastasiia KimiD· 1 shared Cullen RothiD· 1 shared Shawn R. StarkenburgiD· 1 shared Vanessa JobiD· 1 shared Vrinda VenuiD· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

7 top collaborators · 17 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenetics

Christina R. SteadmanORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

GeneticsBioinformatics AdvancesPeer-reviewedDec 26, 2024

Statistical relationships across epigenomes using large-scale hierarchical clustering

Anastasiia Kim, Nicholas Lubbers, Christina R. Steadman, Karissa Y. Sanbonmatsu

The paper uses hierarchical clustering to analyze over 3,000 epigenomes and characterize relationships among epigenetic modifiers, their modifiers, and immune cell types.

DOI 10.1093/bioadv/vbaf175

humanDNA methylation

𝕏 PostBluesky

BioinformaticsBMC BioinformaticsPeer-reviewedNov 21, 2023

Improved Quality Metrics for Association and Reproducibility in Chromatin Accessibility Data Using Mutual Information

Cullen Roth, Vrinda Venu, Vanessa Job…·Shawn R. Starkenburg

The paper evaluates correlation and association statistics for ATAC-seq data, finding that mutual information performs best in predicting replicate relationships after removing co-zeros.

7 citations

humanATAC-seq

𝕏 PostBluesky