Author

Botond Sipos

European Bioinformatics InstituteORCID 0000-0002-9046-3302Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Botond Sipos2 papers

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Organism:human· 1 Assay:long-read sequencing· 1 Organism:plant (other)· 1 Assay:scRNA-seq· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Alex D. TwyfordiD· 1 shared Andrea Volfova· 1 shared Attila CsordásiD· 1 shared Boris TichýiD· 1 shared Damien G. HicksiD· 1 shared Fergal J. MartiniD· 1 shared Frantisek Zamola· 1 shared Jim DownieiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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1 shared paperEvolutionary Biology

Alex D. TwyfordORCID

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3 papers

Recent·Most cited

Conserved genes, discordant structure: a pangenomic view of plant mitochondrial genome evolution

Max R. Brown, Jim Downie, Nathan M Riley, Rory J. Craig, Lucía Campos, Botond Sipos, Jitender Cheema, Leanne S. Haggerty, Fergal J. Martin, Alex D. Twyford

This study analyzes over 300 plant mitochondrial genomes to show that gene content is conserved but structural complexity varies, driven by repeat proliferation and recombination rather than intergenomic DNA transfer.

bioRxiv · Oct 28, 2026 · PreprintEvolutionary Biology

Cell Tree Rings: the structure of somatic evolution as a human aging timer

Attila Csordás, Botond Sipos, Terézia Kurucová, Andrea Volfova, Frantisek Zamola, Boris Tichý, Damien G. Hicks

This paper introduces a method to estimate biological age using cell lineage trees derived from somatic mutations in scRNA-seq data, showing strong correlation with chronological age.

GeroScience · Jan 3, 2024Peer-reviewedGenomics

Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis

Kristoffer Sahlin, Botond Sipos, Phillip L. James, Paul Medvedev

The paper introduces isONcorrect, a method to error correct Oxford Nanopore cDNA data, enabling reference-free transcriptome analysis with high accuracy.

Nature Communications · Jan 4, 2021Peer-reviewedBioinformatics