Author

James D. Beck

Boise State UniversityORCID 0000-0002-9086-2653Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:benchmarking· 1 Assay:DNA methylation· 1 Approach:machine learning (classical)· 1 Organism:multiple species· 1 Assay:proteomics· 1 Research Focus:sequence-to-function modeling· 1

Frequent Co-Authors

Eric J. HaydeniD· 3 shared Devin P. BendixseniD· 2 shared Jessica M. RobertsiD· 2 shared Ashlyn Trapp· 1 shared Edoardo SerraiD· 1 shared Esteban Palencia Hurtado· 1 shared Francesca SpezzanoiD· 1 shared Jennifer S. ForbeyiD· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersMolecular Biology

Eric J. HaydenORCID

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3 papers

Recent·Most cited

RNA sequence to structure analysis from comprehensive pairwise mutagenesis of multiple self-cleaving ribozymes

Jessica M. Roberts, James D. Beck, Tanner B Pollock, Devin P. Bendixsen, Eric J. Hayden

The paper analyzes RNA sequence to structure relationships using comprehensive mutagenesis data from self-cleaving ribozymes to identify structural features and functional critical nucleotides.

eLife · Jan 19, 2023Peer-reviewedMolecular Biology

Predicting higher-order mutational effects in an RNA enzyme by machine learning of high-throughput experimental data

James D. Beck, Jessica M. Roberts, Joey Kitzhaber, Ashlyn Trapp, Edoardo Serra, Francesca Spezzano, Eric J. Hayden

The paper uses machine learning to predict RNA enzyme activity from sequence data, showing improved predictions with more diverse training data.

Frontiers in Molecular Biosciences · Aug 15, 2022Peer-reviewedMolecular Biology

Universal assay for measuring vertebrate telomeres by real-time quantitative PCR

Stephanie Fern Hudon, Esteban Palencia Hurtado, James D. Beck, Steven J. Burden, Devin P. Bendixsen, Kathleen R. Callery, Jennifer S. Forbey, Lisette P. Waits, Robert A. Miller, Ólafur Karl Nielsen, Julie A. Heath, Eric J. Hayden

The paper develops universal reference primers for qPCR-based telomere length measurement in any vertebrate species.

bioRxiv · Jan 28, 2020 · PreprintMolecular Biology