Author

Tomáš Vičar

Masaryk UniversityORCID 0000-0002-9136-7873Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Assay:imaging· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Organism:human· 1

Frequent Co-Authors

Jaromír GumuleciD· 2 shared Radim KolářiD· 2 shared Eva Pagáčová· 1 shared Iva FalkováiD· 1 shared Ivo ProvazníkiD· 1 shared Jan BalvaniD· 1 shared Jiří ChmelíkiD· 1 shared Larisa ChmelíkováiD· 1 shared

Activity by Year

2021-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersBioinformatics

Jaromír GumulecORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

Self-Supervised Pretraining for Transferable Quantitative Phase Image Cell Segmentation

Tomáš Vičar, Jiří Chmelík, Roman Jakubíček, Larisa Chmelíková, Jaromír Gumulec, Jan Balvan, Ivo Provazník, Radim Kolář

The paper develops a U-Net-based method for cell segmentation in quantitative phase microscopy images, improves transferability with post-processing and self-supervised pretraining, and introduces a new dataset.

Biomedical Optics Express · Sep 6, 2021Peer-reviewedBioinformatics

DeepFoci: Deep Learning-Based Algorithm for Fast Automatic Analysis of DNA Double Strand Break Ionizing Radiation-Induced Foci

Tomáš Vičar, Jaromír Gumulec, Radim Kolář, Olga Kopečná, Eva Pagáčová, Iva Falková, Martin Falk

DeepFoci is a deep learning algorithm that automatically quantifies and analyzes IRIF with high accuracy, outperforming existing methods and enabling detailed study of DSB repair and tumor classification.

Computational and Structural Biotechnology Journal · Jan 1, 2021Peer-reviewedBioinformatics