Author

Roman Jakubíček

Brno University of TechnologyORCID 0000-0003-4293-260XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:clustering· 1 Research Focus:gene regulatory network inference· 1 Assay:imaging· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Helena ŠkutkováiD· 1 shared Ivo ProvazníkiD· 1 shared Jan BalvaniD· 1 shared Jaromír GumuleciD· 1 shared Jiří ChmelíkiD· 1 shared Larisa ChmelíkováiD· 1 shared Markéta NykrýnováiD· 1 shared Martina LengerováiD· 1 shared

Activity by Year

2021-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Helena ŠkutkováORCID

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2 papers

Recent·Most cited

BioinformaticsFrontiers in MicrobiologyPeer-reviewedSep 15, 2022

Using Deep Learning for Gene Detection and Classification in Raw Nanopore Signals

Markéta Nykrýnová, Vojtěch Bartoň, Roman Jakubíček…·Helena Škutková

This paper presents a neural network that detects and classifies genomic regions from raw nanopore signals, bypassing the need for basecalling.

5 citations

long-read sequencingdeep learning

𝕏 PostBluesky

BioinformaticsBiomedical Optics ExpressPeer-reviewedSep 6, 2021

Self-Supervised Pretraining for Transferable Quantitative Phase Image Cell Segmentation

Tomáš Vičar, Jiří Chmelík, Roman Jakubíček…·Radim Kolář

The paper develops a U-Net-based method for cell segmentation in quantitative phase microscopy images, improves transferability with post-processing and self-supervised pretraining, and introduces a new dataset.

10 citations

imagingdeep learning

𝕏 PostBluesky