Author

Stephen Keenan

European Bioinformatics InstituteORCID 0000-0002-9141-7690Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Assay:DNA methylation· 1 Organism:human· 1 Organism:multiple species· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Abram Connelly· 1 shared Adam M. NovakiD· 1 shared Alessandro VulloiD· 1 shared Alexander DiltheyiD· 1 shared Alexander Wait ZaranekiD· 1 shared André KahlesiD· 1 shared Andreas KähäriiD· 1 shared Andrew D. YatesiD· 1 shared

Activity by Year

2017-2017 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Abram Connelly

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2 papers

Recent·Most cited

Genome Graphs

Adam M. Novak, Glenn Hickey, Erik P. Garrison, Sean Blum, Abram Connelly, Alexander Dilthey, Jordan M. Eizenga, M. A. Saleh Elmohamed, Sally Guthrie, André Kahles, Stephen Keenan, Jerome Kelleher, Deniz Kural, Heng Li, Michael F. Lin, , Benedict Paten

This paper introduces genome graphs as an alternative to linear reference genomes, showing they improve read mapping and variant calling compared to the standard GRCh38 reference.

bioRxiv · Jan 18, 2017 · PreprintBioinformatics

Ensembl Core Software Resources: storage and programmatic access for DNA sequence and genome annotation

Magali Ruffier, Andreas Kähäri, Monika Komorowska, Stephen Keenan, Matthew R. Laird, Ian Longden, Glenn Proctor, Steve M. J. Searle, Daniel Michael Staines, Kieron Taylor, Alessandro Vullo, Andrew D. Yates, Daniel R. Zerbino, Paul Flicek

The paper describes the Ensembl Core software infrastructure for storing and accessing genome assemblies and annotations, supporting multiple species and providing APIs for programmatic access.

Database · Jan 1, 2017Peer-reviewedBioinformatics