Author

Qiuyue Hu

Chinese Academy of SciencesORCID 0000-0002-9236-7963Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:deep learning· 1 Assay:DNA methylation· 1 Organism:multiple species· 1 Research Focus:sequence-to-function modeling· 1 Approach:transformer / foundation model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Jingjing GuoiD· 1 shared Jintao MengiD· 1 shared Liangzhen ZhengiD· 1 shared Rui ZhouiD· 1 shared Shen WangiD· 1 shared Weifeng LiiD· 1 shared Xiaolin TianiD· 1 shared Yanjie WeiiD· 1 shared

Activity by Year

2025-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Jingjing GuoORCID

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1 paper

Recent·Most cited

Learning the native-like codons with a 5'UTR and RNA secondary structure aided species-informed transformer model

Qiuyue Hu, Xiaolin Tian, Yuanning Li, Rui Zhou, Zhihao Wang, Jintao Meng, Shen Wang, Jingjing Guo, Weifeng Li, Liangzhen Zheng, Yanjie Wei

TransCodon is a Transformer-based model that predicts optimal synonymous codons by integrating species-specific information, 5'UTRs, and RNA structure, improving translational efficiency in heterologous hosts.

bioRxiv · Jul 19, 2025 · PreprintBioinformatics