Author

Jia Min Lee

University of CopenhagenORCID 0000-0002-9258-2444Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Organism:plant (other)· 3 Approach:statistical model· 3 Research Focus:cell type annotation· 1 Research Focus:dimensionality reduction· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:phylogenetics / evolution· 1

Frequent Co-Authors

Marek MutwiliD· 3 shared Amandine Layens· 1 shared Birgit ClasseniD· 1 shared Bodil Joergensen· 1 shared Boon Chuan Ho· 1 shared Camille Alvarado· 1 shared Daniela Mutwil‐AnderwaldiD· 1 shared Eshchar MizrachiiD· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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3 shared papersPlant Biology

Marek MutwilORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

ORBIT: Orthogonal Rotation for Biological Inter-species Transfer

Paul Wissenberg, Jia Min Lee, Marek Mutwil

ORBIT aligns cross-species coexpression network embeddings using orthogonal Procrustes rotation, achieving higher cross-species retrieval quality than autoencoders.

bioRxiv · May 7, 2026 · PreprintBioinformatics

Parallel comparison reveals conservation and re-wiring of abiotic stress response networks across three plant species

Jia Min Lee, Jong Ching Goh, Eugene Koh, Daniela Mutwil‐Anderwald, Marek Mutwil

The paper compares abiotic stress response networks across three plant species, finding conserved gene sets and functional divergence in transcription factors.

Frontiers in Plant Science · Jul 7, 2025Peer-reviewedPlant Biology

Comparative transcriptomics in ferns reveals key innovations and divergent evolution of secondary cell wall

Zahin Mohd Ali, Qiao Wen Tan, Peng Ken Lim, Hengchi Chen, Lukáš Pfeifer, Irene Julca, Jia Min Lee, Birgit Classen, Sophie de Vries, Jan de Vries, Teng Seah Koh, Li Li Chin, Fanny Vinter, Camille Alvarado, Amandine Layens, , Marek Mutwil

The paper generates transcriptomic data for 22 fern species to study their evolutionary genetics and cell wall composition, revealing unique gene families and divergent cell wall biochemistry.

Nature Plants · Apr 23, 2025Peer-reviewedPlant Biology