Author

Andrey Shternshis

Uppsala UniversityORCID 0000-0002-9299-369XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:differential expression· 1 Research Focus:imputation· 1

Frequent Co-Authors

Luisa Warchavchik HugerthiD· 2 shared Prashant SinghiD· 2 shared Alkistis SkalkidouiD· 1 shared Bangzhuo TongiD· 1 shared Carolina WählbyiD· 1 shared Dave ZachariahiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

6 top collaborators · 15 mutual co-author links

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2 shared papersBioinformatics

Luisa Warchavchik HugerthORCID

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2 papers

Recent·Most cited

Imputing relative abundances via Gaussian random fields

Andrey Shternshis, Prashant Singh, Luisa Warchavchik Hugerth

The paper introduces a Gaussian random field model for imputing missing data in longitudinal microbiome studies, achieving comparable accuracy to baselines while modeling temporal and multivariate correlations.

bioRxiv · Oct 13, 2026 · PreprintBioinformatics

Predicting allergy and postpartum depression from incomplete compositional microbiome

Andrey Shternshis, Bangzhuo Tong, Alkistis Skalkidou, Carolina Wählby, Dave Zachariah, Luisa Warchavchik Hugerth, Prashant Singh

The paper predicts food allergies and postpartum depression using microbiome time series data with imputation and logarithmic transformation, achieving balanced accuracies of 0.72 and 0.62 respectively.

BMC Genomics · Dec 6, 2025Peer-reviewedBioinformatics