Author

Dave Zachariah

Uppsala UniversityORCID 0000-0002-6698-0166Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Approach:contrastive learning· 1 Assay:metagenomics· 1

Frequent Co-Authors

Alkistis SkalkidouiD· 1 shared Andrey ShternshisiD· 1 shared Bangzhuo TongiD· 1 shared Carolina WählbyiD· 1 shared Jessica NordlundiD· 1 shared Luisa Warchavchik HugerthiD· 1 shared Mariya Lysenkova WiklanderiD· 1 shared Olga KraliiD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

9 top collaborators · 18 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperBioinformatics

Alkistis SkalkidouORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

BioinformaticsBMC GenomicsPeer-reviewedDec 6, 2025

Predicting allergy and postpartum depression from incomplete compositional microbiome

Andrey Shternshis, Bangzhuo Tong, Alkistis Skalkidou…·Prashant Singh

The paper predicts food allergies and postpartum depression using microbiome time series data with imputation and logarithmic transformation, achieving balanced accuracies of 0.72 and 0.62 respectively.

DOI 10.1186/s12864-025-12390-3

humanmetagenomics

𝕏 PostBluesky

BioinformaticsJCO Clinical Cancer InformaticsPeer-reviewedMay 28, 2025

Error reduction in leukemia machine learning classification with conformal prediction

Mariya Lysenkova Wiklander, Dave Zachariah, Olga Krali, Jessica Nordlund

This study applies conformal prediction to reduce false negative rates in leukemia subtype classification using RNA-seq data.

2 citations

humanbulk RNA-seq

𝕏 PostBluesky