Author

Tami L. Swenson

Lawrence Berkeley National LaboratoryORCID 0000-0002-9488-7970Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:cell-cell communication· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Marc W. Van GoethemiD· 2 shared Trent R. NortheniD· 2 shared Aaron WattersiD· 1 shared Alexander A. AksenoviD· 1 shared Alicia ClumiD· 1 shared Andrew R. OsborniD· 1 shared Axel ViseliD· 1 shared Benjamin P. BoweniD· 1 shared

Activity by Year

2019-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersGenomics

Marc W. Van GoethemORCID

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2 papers

Recent·Most cited

Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics

Marc W. Van Goethem, Andrew R. Osborn, Benjamin P. Bowen, Peter F Andeer, Tami L. Swenson, Alicia Clum, Robert W. Riley, Guifen He, Maxim Koriabine, Laura Sandor, Mi Yan, Chris G. Daum, Yuko Yoshinaga, Thulani Peter Makhalanyane, Ferrán García‐Pichel, , Trent R. Northen

This study uses long-read metagenomics and metatranscriptomics to analyze soil communities, revealing phylum-specific secondary metabolite dynamics during wetting events.

Communications Biology · Nov 18, 2021Peer-reviewedGenomics

Revisiting microbe-metabolite interactions: doing better than random

James T. Morton, Daniel T. McDonald, Alexander A. Aksenov, Louis-Félix Nothias-Scaglia, James R. Foulds, Robert A. Quinn, Michelle H. Badri, Tami L. Swenson, Marc W. Van Goethem, Trent R. Northen, Yoshiki Vázquez‐Baeza, Mingxun Wang, Nicholas A. Bokulich, Aaron Watters, Se Jin Song, , Rob D. Knight

The paper compares correlation/proportionality methods with MMvec for identifying microbe-metabolite interactions and finds MMvec performs better on real data due to its handling of sparsity.

bioRxiv · Dec 10, 2019 · PreprintBioinformatics